Model Balancing
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JSON file format for model-balancing
python API reference
Proof of convexity
Example Model
Model Balancing
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Index
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A
ALL_VARIABLES (in module src.model_balancing)
B
B_matrix() (in module src.model_balancing.util)
C
convert_to_irreversible() (in module src.model_balancing)
D
DEFAULT_UNITS (in module src.model_balancing)
DEPENDENT_VARIABLES (in module src.model_balancing)
driving_forces() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex property)
(src.model_balancing.model_balancing_noncvx.ModelBalancing property)
E
extend_var_dict_to_dependent_params() (src.model_balancing.model_balancing_noncvx.ModelBalancing method)
extend_variable_vector() (src.model_balancing.model_balancing_noncvx.ModelBalancing method)
F
find_inner_point() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
G
get_config() (in module src.model_balancing._version)
get_convex_solution() (in module src.model_balancing.batch)
get_keywords() (in module src.model_balancing._version)
get_versions() (in module src.model_balancing._version)
get_z_scores() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
git_get_keywords() (in module src.model_balancing._version)
git_pieces_from_vcs() (in module src.model_balancing._version)
git_versions_from_keywords() (in module src.model_balancing._version)
H
HANDLERS (in module src.model_balancing._version)
I
INDEPENDENT_VARIABLES (in module src.model_balancing)
initialize_with_gmeans() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
is_gmean_feasible() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
L
ln_conc_enz() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex property)
(src.model_balancing.model_balancing_noncvx.ModelBalancing property)
ln_eta_kinetic() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex property)
(src.model_balancing.model_balancing_noncvx.ModelBalancing property)
ln_eta_regulation() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex property)
(src.model_balancing.model_balancing_noncvx.ModelBalancing property)
ln_eta_thermodynamic() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex property)
(src.model_balancing.model_balancing_noncvx.ModelBalancing property)
ln_kcatr() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex property)
(src.model_balancing.model_balancing_noncvx.ModelBalancing property)
logistic() (in module src.model_balancing.util)
LONG_VERSION_PY (in module src.model_balancing._version)
M
MIN_DRIVING_FORCE (in module src.model_balancing)
MIN_FLUX (in module src.model_balancing)
MODEL_VARIABLES (in module src.model_balancing)
ModelBalancing (class in src.model_balancing.model_balancing_noncvx)
ModelBalancingConvex (class in src.model_balancing.model_balancing_cvx)
module
src.model_balancing
src.model_balancing._version
src.model_balancing.batch
src.model_balancing.io
src.model_balancing.model_balancing_cvx
src.model_balancing.model_balancing_noncvx
src.model_balancing.util
N
NotThisMethod
O
objective_function() (src.model_balancing.model_balancing_noncvx.ModelBalancing method)
objective_value() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex property)
(src.model_balancing.model_balancing_noncvx.ModelBalancing property)
P
parameter_constraints() (src.model_balancing.model_balancing_noncvx.ModelBalancing property)
penalty_term_beta() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
plus_or_dot() (in module src.model_balancing._version)
print_status() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
print_z_scores() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
Q
Q_ (in module src.model_balancing)
R
register_vcs_handler() (in module src.model_balancing._version)
render() (in module src.model_balancing._version)
render_git_describe() (in module src.model_balancing._version)
render_git_describe_long() (in module src.model_balancing._version)
render_pep440() (in module src.model_balancing._version)
render_pep440_old() (in module src.model_balancing._version)
render_pep440_post() (in module src.model_balancing._version)
render_pep440_pre() (in module src.model_balancing._version)
RT (in module src.model_balancing)
run_batch() (in module src.model_balancing.batch)
run_command() (in module src.model_balancing._version)
S
solve() (src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
src.model_balancing
module
src.model_balancing._version
module
src.model_balancing.batch
module
src.model_balancing.io
module
src.model_balancing.model_balancing_cvx
module
src.model_balancing.model_balancing_noncvx
module
src.model_balancing.util
module
standardize_input_matrix() (in module src.model_balancing.io)
STATE_VARIABLES (in module src.model_balancing)
T
thermodynamic_constraints() (src.model_balancing.model_balancing_noncvx.ModelBalancing property)
to_model_sbtab() (in module src.model_balancing.io)
(src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
to_state_sbtab() (in module src.model_balancing.io)
(src.model_balancing.model_balancing_cvx.ModelBalancingConvex method)
(src.model_balancing.model_balancing_noncvx.ModelBalancing method)
U
ureg (in module src.model_balancing)
V
var_dict_to_vector() (src.model_balancing.model_balancing_noncvx.ModelBalancing method)
var_dict_to_z_scores() (src.model_balancing.model_balancing_noncvx.ModelBalancing method)
var_vector_to_dict_all() (src.model_balancing.model_balancing_noncvx.ModelBalancing method)
var_vector_to_z_scores() (src.model_balancing.model_balancing_noncvx.ModelBalancing method)
VersioneerConfig (class in src.model_balancing._version)
versions_from_parentdir() (in module src.model_balancing._version)
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